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Description : Transducin/WD40 repeat-like superfamily protein
Gene families : OG_01_0001956 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001956_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os12g40260.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os12g40260.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_204 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_90 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR015943 | WD40/YVTN_repeat-like_dom_sf | Gene3D | 189 | 283 |
| IPR036322 | WD40_repeat_dom_sf | SUPERFAMILY | 90 | 426 |
| IPR045182 | JINGUBANG-like | PANTHER | 1 | 455 |
| IPR001680 | WD40_rpt | SMART | 334 | 371 |
| IPR001680 | WD40_rpt | SMART | 235 | 274 |
| IPR001680 | WD40_rpt | SMART | 284 | 323 |
| IPR001680 | WD40_rpt | SMART | 120 | 158 |
| IPR001680 | WD40_rpt | SMART | 377 | 423 |
| IPR001680 | WD40_rpt | SMART | 82 | 119 |
| IPR001680 | WD40_rpt | SMART | 194 | 232 |
| IPR015943 | WD40/YVTN_repeat-like_dom_sf | Gene3D | 284 | 438 |
| IPR001680 | WD40_rpt | ProSiteProfiles | 200 | 241 |
| IPR001680 | WD40_rpt | ProSiteProfiles | 384 | 432 |
| IPR015943 | WD40/YVTN_repeat-like_dom_sf | Gene3D | 81 | 169 |
| IPR001680 | WD40_rpt | ProSiteProfiles | 242 | 273 |
| IPR001680 | WD40_rpt | ProSiteProfiles | 341 | 370 |
| IPR001680 | WD40_rpt | Pfam | 203 | 231 |
| IPR001680 | WD40_rpt | Pfam | 381 | 422 |
| IPR001680 | WD40_rpt | Pfam | 340 | 370 |
| IPR001680 | WD40_rpt | Pfam | 237 | 273 |
| IPR020472 | G-protein_beta_WD-40_rep | PRINTS | 410 | 424 |
| IPR020472 | G-protein_beta_WD-40_rep | PRINTS | 358 | 372 |
| IPR020472 | G-protein_beta_WD-40_rep | PRINTS | 219 | 233 |
No CAZYmes available for this sequence
| No external refs found! |