Sevir.5G111700.1

Description : BRCA2-like B

Gene families : OG_01_0009972 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0009972_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.5G111700.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.5G111700.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_118
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_18

Type	GO Term	Name	Evidence	Source
BP	GO:0000724	double-strand break repair via homologous recombination	ISM	GOs from InterProScan
BP	GO:0000725	recombinational repair	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	ISM	GOs from InterProScan
BP	GO:0006302	double-strand break repair	None	Extended
BP	GO:0006310	DNA recombination	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002093	BRCA2_repeat	ProSiteProfiles	94	128
IPR002093	BRCA2_repeat	ProSiteProfiles	478	512
IPR015205	Tower_dom	SMART	1133	1173
IPR036315	BRCA2_hlx_sf	SUPERFAMILY	795	958
IPR002093	BRCA2_repeat	Pfam	100	125
IPR002093	BRCA2_repeat	Pfam	180	207
IPR002093	BRCA2_repeat	Pfam	353	375
IPR002093	BRCA2_repeat	Pfam	481	509
IPR002093	BRCA2_repeat	Pfam	268	293
IPR002093	BRCA2_repeat	Pfam	636	661
IPR002093	BRCA2_repeat	ProSiteProfiles	630	664
IPR015187	BRCA2_OB_1	CDD	972	1097
IPR012340	NA-bd_OB-fold	SUPERFAMILY	1104	1332
IPR015187	BRCA2_OB_1	Pfam	960	1098
IPR015525	BRCA2	PANTHER	633	1477
IPR012340	NA-bd_OB-fold	SUPERFAMILY	959	1101
IPR012340	NA-bd_OB-fold	SUPERFAMILY	1334	1492
IPR002093	BRCA2_repeat	ProSiteProfiles	176	210
IPR015525	BRCA2	PANTHER	1	574
IPR015525	BRCA2	PANTHER	481	674
IPR015252	BRCA2_hlx	Pfam	885	955

No CAZYmes available for this sequence

External Links

No external refs found!