Sevir.5G118200.1

Description : DEAD box RNA helicase 1

Gene families : OG_01_0003666 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003666_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.5G118200.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.5G118200.1	No neighbors in network
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_83

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003724	RNA helicase activity	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
MF	GO:0008186	ATP-dependent activity, acting on RNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001650	Helicase_C	ProSiteProfiles	391	535
IPR011545	DEAD/DEAH_box_helicase_dom	Pfam	181	351
IPR001650	Helicase_C	Pfam	388	496
IPR001202	WW_dom	ProSiteProfiles	20	54
IPR014001	Helicase_ATP-bd	SMART	176	379
IPR027417	P-loop_NTPase	SUPERFAMILY	229	512
IPR001202	WW_dom	ProSitePatterns	26	52
IPR001202	WW_dom	Pfam	22	52
IPR036020	WW_dom_sf	SUPERFAMILY	17	54
IPR001202	WW_dom	CDD	23	53
IPR000629	RNA-helicase_DEAD-box_CS	ProSitePatterns	308	316
IPR014001	Helicase_ATP-bd	ProSiteProfiles	188	362
IPR027417	P-loop_NTPase	Gene3D	365	539
IPR014014	RNA_helicase_DEAD_Q_motif	ProSiteProfiles	157	185
IPR001650	Helicase_C	SMART	416	496
IPR027417	P-loop_NTPase	Gene3D	130	364
IPR001202	WW_dom	SMART	21	54

No CAZYmes available for this sequence

External Links

No external refs found!