- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0002280 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002280_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.5G140300.1 | |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.5G140300.1 | |
| Cluster | Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_92 | |
| Cluster | Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_12 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 631 | 665 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 208 | 244 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 420 | 454 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 491 | 525 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 177 | 209 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 599 | 632 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 317 | 350 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 634 | 667 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 248 | 281 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 352 | 385 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 424 | 456 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 282 | 316 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 493 | 527 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 210 | 246 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 529 | 561 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 630 | 676 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 280 | 328 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 177 | 218 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 421 | 468 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 525 | 574 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 352 | 398 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 600 | 628 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 493 | 522 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 483 | 553 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 415 | 482 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 342 | 414 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 315 | 349 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 526 | 560 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 280 | 314 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 596 | 630 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 224 | 341 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 136 | 223 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 245 | 279 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 350 | 384 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 574 | 701 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 173 | 207 |
No CAZYmes available for this sequence
| No external refs found! |