Sevir.5G147000.2

Description : RNA helicase family protein

Gene families : OG_01_0000972 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000972_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.5G147000.2
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.5G147000.2	No neighbors in network
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_7

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	ISM	GOs from InterProScan
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR027417	P-loop_NTPase	SUPERFAMILY	43	578
IPR014001	Helicase_ATP-bd	SMART	49	235
IPR014001	Helicase_ATP-bd	ProSiteProfiles	61	226
IPR001650	Helicase_C	Pfam	271	399
IPR007502	Helicase-assoc_dom	SMART	461	552
IPR027417	P-loop_NTPase	Gene3D	29	229
IPR001650	Helicase_C	SMART	300	400
IPR007502	Helicase-assoc_dom	Pfam	462	549
IPR002464	DNA/RNA_helicase_DEAH_CS	ProSitePatterns	168	177
IPR001650	Helicase_C	ProSiteProfiles	265	441
IPR027417	P-loop_NTPase	Gene3D	246	421

No CAZYmes available for this sequence

External Links

No external refs found!