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  5. Sevir.5G172200.1

Sevir.5G172200.1


Description : dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative


Gene families : OG_01_0007940 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007940_tree

Sequence : cds (download), rna (download), protein (download)


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Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.5G172200.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.5G172200.1 No neighbors in network
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_108


Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity ISM GOs from InterProScan
MF GO:0003855 3-dehydroquinate dehydratase activity ISM GOs from InterProScan
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity ISM GOs from InterProScan
BP GO:0019632 shikimate metabolic process ISM GOs from InterProScan
MF GO:0050661 NADP binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR006151 Shikm_DH/Glu-tRNA_Rdtase Pfam 354 413
IPR001381 DHquinase_I Hamap 3 225
IPR022893 Shikimate_DH_fam Hamap 231 507
IPR036291 NAD(P)-bd_dom_sf SUPERFAMILY 340 504
IPR011342 Shikimate_DH TIGRFAM 232 498
IPR022893 Shikimate_DH_fam PANTHER 1 509
IPR001381 DHquinase_I CDD 3 224
IPR001381 DHquinase_I Pfam 5 222
IPR013785 Aldolase_TIM Gene3D 1 230
IPR001381 DHquinase_I TIGRFAM 4 222
IPR041121 SDH_C Pfam 475 504
IPR013708 Shikimate_DH-bd_N Pfam 236 316

No CAZYmes available for this sequence

No external refs found!