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  5. Sevir.5G177535.1

Sevir.5G177535.1


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_01_0012770 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012770_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.5G177535.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.5G177535.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_336
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_89


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0003729 mRNA binding ISM GOs from InterProScan
CC GO:0005634 nucleus ISM GOs from InterProScan
CC GO:0005737 cytoplasm ISM GOs from InterProScan
BP GO:0006396 RNA processing ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR008111 RNA-bd_8 PRINTS 49 61
IPR008111 RNA-bd_8 PRINTS 141 157
IPR008111 RNA-bd_8 PRINTS 159 171
IPR008111 RNA-bd_8 PRINTS 85 99
IPR035979 RBD_domain_sf SUPERFAMILY 87 193
IPR000504 RRM_dom SMART 95 168
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 13 185
IPR033744 RRM_RBM8 CDD 88 175
IPR000504 RRM_dom ProSiteProfiles 94 172
IPR000504 RRM_dom Pfam 96 160
IPR008111 RNA-bd_8 PANTHER 1 195

No CAZYmes available for this sequence

No external refs found!