Sevir.5G182600.1

Description : Actin binding Calponin homology (CH) domain-containing protein

Gene families : OG_01_0000698 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000698_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.5G182600.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.5G182600.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_160
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_176

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003779	actin binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0007015	actin filament organization	None	Extended
MF	GO:0008092	cytoskeletal protein binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
MF	GO:0051015	actin filament binding	ISM	GOs from InterProScan
BP	GO:0051017	actin filament bundle assembly	ISM	GOs from InterProScan
BP	GO:0061572	actin filament bundle organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0097435	supramolecular fiber organization	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001589	Actinin_actin-bd_CS	ProSitePatterns	249	273
IPR036872	CH_dom_sf	Gene3D	545	658
IPR001715	CH_dom	ProSiteProfiles	431	537
IPR001715	CH_dom	CDD	306	407
IPR001715	CH_dom	CDD	432	535
IPR001715	CH_dom	SMART	307	407
IPR001715	CH_dom	SMART	433	535
IPR001715	CH_dom	SMART	162	275
IPR001715	CH_dom	SMART	554	659
IPR036872	CH_dom_sf	Gene3D	156	282
IPR001715	CH_dom	ProSiteProfiles	160	277
IPR039959	Fimbrin/Plastin	PANTHER	1	699
IPR001715	CH_dom	ProSiteProfiles	305	409
IPR001715	CH_dom	CDD	161	275
IPR001715	CH_dom	Pfam	306	408
IPR001715	CH_dom	Pfam	433	536
IPR001715	CH_dom	Pfam	192	275
IPR001715	CH_dom	Pfam	555	660
IPR036872	CH_dom_sf	Gene3D	283	412
IPR001715	CH_dom	ProSiteProfiles	552	661
IPR036872	CH_dom_sf	SUPERFAMILY	158	658
IPR036872	CH_dom_sf	Gene3D	427	544

No CAZYmes available for this sequence

External Links

No external refs found!