Sevir.5G207600.1

Description : carbamoyl phosphate synthetase B

Gene families : OG_01_0007805 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007805_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.5G207600.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.5G207600.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_32
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_74

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
BP	GO:0006807	nitrogen compound metabolic process	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	ISM	GOs from InterProScan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR036914	MGS-like_dom_sf	SUPERFAMILY	1018	1155
IPR005479	CbamoylP_synth_lsu-like_ATP-bd	Pfam	196	403
IPR005479	CbamoylP_synth_lsu-like_ATP-bd	Pfam	754	958
IPR016185	PreATP-grasp_dom_sf	SUPERFAMILY	624	756
IPR006275	CarbamoylP_synth_lsu	Hamap	73	1153
IPR006275	CarbamoylP_synth_lsu	TIGRFAM	73	1136
IPR005479	CbamoylP_synth_lsu-like_ATP-bd	ProSitePatterns	366	373
IPR016185	PreATP-grasp_dom_sf	SUPERFAMILY	74	195
IPR036897	CarbamoylP_synth_lsu_oligo_sf	Gene3D	478	621
IPR005480	CarbamoylP_synth_lsu_oligo	SMART	492	615
IPR011761	ATP-grasp	ProSiteProfiles	759	952
IPR005483	CbamoylP_synth_lsu_CPSase_dom	PRINTS	308	325
IPR005483	CbamoylP_synth_lsu_CPSase_dom	PRINTS	366	395
IPR005483	CbamoylP_synth_lsu_CPSase_dom	PRINTS	448	466
IPR005483	CbamoylP_synth_lsu_CPSase_dom	PRINTS	237	249
IPR005483	CbamoylP_synth_lsu_CPSase_dom	PRINTS	87	101
IPR005483	CbamoylP_synth_lsu_CPSase_dom	PRINTS	116	126
IPR005483	CbamoylP_synth_lsu_CPSase_dom	PRINTS	273	292
IPR011761	ATP-grasp	ProSiteProfiles	201	397
IPR036897	CarbamoylP_synth_lsu_oligo_sf	SUPERFAMILY	464	622
IPR006275	CarbamoylP_synth_lsu	Hamap	69	1146
IPR005479	CbamoylP_synth_lsu-like_ATP-bd	ProSitePatterns	233	247
IPR011607	MGS-like_dom	ProSiteProfiles	1019	1160
IPR005480	CarbamoylP_synth_lsu_oligo	Pfam	495	572
IPR033937	MGS_CPS_CarB	CDD	1025	1133
IPR005479	CbamoylP_synth_lsu-like_ATP-bd	ProSitePatterns	921	928
IPR013815	ATP_grasp_subdomain_1	Gene3D	767	836
IPR036914	MGS-like_dom_sf	Gene3D	1019	1156
IPR011607	MGS-like_dom	Pfam	1039	1125
IPR011607	MGS-like_dom	SMART	1038	1125
IPR005479	CbamoylP_synth_lsu-like_ATP-bd	ProSitePatterns	790	804

No CAZYmes available for this sequence

External Links

No external refs found!