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  5. Sevir.5G209700.1

Sevir.5G209700.1


Description : stomatal cytokinesis defective / SCD1 protein (SCD1)


Gene families : OG_01_0005976 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005976_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.5G209700.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.5G209700.1 No neighbors in network
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_12


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001680 WD40_rpt ProSiteProfiles 1069 1101
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 845 1202
IPR001680 WD40_rpt ProSiteProfiles 1029 1068
IPR001680 WD40_rpt ProSiteProfiles 946 986
IPR005112 dDENN_dom Pfam 400 452
IPR043153 DENN_C Gene3D 205 390
IPR037516 Tripartite_DENN ProSiteProfiles 22 447
IPR001680 WD40_rpt Pfam 904 936
IPR001680 WD40_rpt Pfam 1064 1100
IPR001680 WD40_rpt Pfam 1025 1059
IPR001680 WD40_rpt Pfam 845 894
IPR001680 WD40_rpt Pfam 941 977
IPR001680 WD40_rpt SMART 1022 1059
IPR001680 WD40_rpt SMART 1062 1101
IPR001680 WD40_rpt SMART 843 894
IPR001680 WD40_rpt SMART 1160 1199
IPR001680 WD40_rpt SMART 939 977
IPR001680 WD40_rpt SMART 980 1019
IPR001680 WD40_rpt SMART 1105 1142
IPR001680 WD40_rpt SMART 899 936
IPR005113 uDENN_dom Pfam 38 106
IPR001680 WD40_rpt ProSiteProfiles 876 894
IPR005113 uDENN_dom SMART 4 107
IPR001194 cDENN_dom SMART 125 309
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 803 1028
IPR005112 dDENN_dom SMART 369 439
IPR019775 WD40_repeat_CS ProSitePatterns 1186 1200
IPR019775 WD40_repeat_CS ProSitePatterns 964 978
IPR001194 cDENN_dom Pfam 127 307
IPR001680 WD40_rpt ProSiteProfiles 906 945
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 1029 1203
IPR020472 G-protein_beta_WD-40_rep PRINTS 1046 1060
IPR020472 G-protein_beta_WD-40_rep PRINTS 881 895
IPR020472 G-protein_beta_WD-40_rep PRINTS 964 978

No CAZYmes available for this sequence

No external refs found!