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Description : LisH dimerisation motif;WD40/YVTN repeat-like-containing domain
Gene families : OG_01_0007042 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007042_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.5G226900.1 | |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.5G226900.1 | No neighbors in network |
| Cluster | Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_158 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003714 | transcription corepressor activity | ISM | GOs from InterProScan |
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR006594 | LisH | SMART | 8 | 40 |
| IPR001680 | WD40_rpt | ProSiteProfiles | 651 | 692 |
| IPR006594 | LisH | Pfam | 10 | 36 |
| IPR001680 | WD40_rpt | ProSiteProfiles | 694 | 736 |
| IPR001680 | WD40_rpt | SMART | 730 | 769 |
| IPR001680 | WD40_rpt | SMART | 602 | 641 |
| IPR001680 | WD40_rpt | SMART | 817 | 856 |
| IPR001680 | WD40_rpt | SMART | 644 | 683 |
| IPR001680 | WD40_rpt | SMART | 773 | 811 |
| IPR001680 | WD40_rpt | SMART | 687 | 727 |
| IPR001680 | WD40_rpt | SMART | 858 | 898 |
| IPR006594 | LisH | ProSiteProfiles | 8 | 40 |
| IPR044716 | LEUNIG-like | PANTHER | 1 | 898 |
| IPR001680 | WD40_rpt | Pfam | 776 | 811 |
| IPR001680 | WD40_rpt | Pfam | 691 | 727 |
| IPR001680 | WD40_rpt | Pfam | 616 | 640 |
| IPR001680 | WD40_rpt | Pfam | 651 | 683 |
| IPR015943 | WD40/YVTN_repeat-like_dom_sf | Gene3D | 588 | 738 |
| IPR019775 | WD40_repeat_CS | ProSitePatterns | 670 | 684 |
| IPR015943 | WD40/YVTN_repeat-like_dom_sf | Gene3D | 739 | 898 |
| IPR001680 | WD40_rpt | ProSiteProfiles | 609 | 640 |
| IPR036322 | WD40_repeat_dom_sf | SUPERFAMILY | 607 | 898 |
| IPR001680 | WD40_rpt | ProSiteProfiles | 866 | 898 |
No CAZYmes available for this sequence
| No external refs found! |