- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : LisH dimerisation motif;WD40/YVTN repeat-like-containing domain
Gene families : OG_01_0004782 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004782_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.5G227100.1 | |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.5G227100.1 | No neighbors in network |
| Cluster | Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_205 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003714 | transcription corepressor activity | ISM | GOs from InterProScan |
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR036322 | WD40_repeat_dom_sf | SUPERFAMILY | 594 | 880 |
| IPR044716 | LEUNIG-like | PANTHER | 10 | 125 |
| IPR001680 | WD40_rpt | ProSiteProfiles | 848 | 880 |
| IPR001680 | WD40_rpt | ProSiteProfiles | 591 | 622 |
| IPR015943 | WD40/YVTN_repeat-like_dom_sf | Gene3D | 724 | 880 |
| IPR001680 | WD40_rpt | Pfam | 758 | 793 |
| IPR001680 | WD40_rpt | Pfam | 672 | 709 |
| IPR001680 | WD40_rpt | Pfam | 629 | 665 |
| IPR001680 | WD40_rpt | Pfam | 597 | 622 |
| IPR006594 | LisH | ProSiteProfiles | 20 | 52 |
| IPR015943 | WD40/YVTN_repeat-like_dom_sf | Gene3D | 570 | 723 |
| IPR001680 | WD40_rpt | ProSiteProfiles | 676 | 718 |
| IPR001680 | WD40_rpt | SMART | 755 | 793 |
| IPR001680 | WD40_rpt | SMART | 841 | 880 |
| IPR001680 | WD40_rpt | SMART | 669 | 709 |
| IPR001680 | WD40_rpt | SMART | 799 | 838 |
| IPR001680 | WD40_rpt | SMART | 626 | 665 |
| IPR001680 | WD40_rpt | SMART | 584 | 623 |
| IPR001680 | WD40_rpt | SMART | 712 | 751 |
| IPR001680 | WD40_rpt | ProSiteProfiles | 633 | 668 |
| IPR044716 | LEUNIG-like | PANTHER | 133 | 880 |
| IPR006594 | LisH | SMART | 20 | 52 |
| IPR006594 | LisH | Pfam | 22 | 48 |
| IPR019775 | WD40_repeat_CS | ProSitePatterns | 652 | 666 |
No CAZYmes available for this sequence
| No external refs found! |