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  5. Sevir.5G250100.3

Sevir.5G250100.3


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0010342 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010342_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.5G250100.3 No neighbors in network
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.5G250100.3
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_109


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 323 371
IPR002885 Pentatricopeptide_rpt Pfam 473 523
IPR002885 Pentatricopeptide_rpt Pfam 579 626
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 359 393
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 474 508
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 293 323
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 113 147
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 299 737
IPR002885 Pentatricopeptide_rpt Pfam 654 678
IPR002885 Pentatricopeptide_rpt Pfam 445 470
IPR002885 Pentatricopeptide_rpt Pfam 219 244
IPR002885 Pentatricopeptide_rpt Pfam 186 215
IPR002885 Pentatricopeptide_rpt Pfam 117 144
IPR011990 TPR-like_helical_dom_sf Gene3D 170 247
IPR011990 TPR-like_helical_dom_sf Gene3D 424 548
IPR011990 TPR-like_helical_dom_sf Gene3D 78 169
IPR002885 Pentatricopeptide_rpt TIGRFAM 617 649
IPR002885 Pentatricopeptide_rpt TIGRFAM 326 360
IPR002885 Pentatricopeptide_rpt TIGRFAM 553 579
IPR002885 Pentatricopeptide_rpt TIGRFAM 186 210
IPR002885 Pentatricopeptide_rpt TIGRFAM 654 677
IPR002885 Pentatricopeptide_rpt TIGRFAM 296 325
IPR002885 Pentatricopeptide_rpt TIGRFAM 581 614
IPR002885 Pentatricopeptide_rpt TIGRFAM 476 504
IPR002885 Pentatricopeptide_rpt TIGRFAM 361 394
IPR032867 DYW_dom Pfam 752 876
IPR011990 TPR-like_helical_dom_sf Gene3D 248 423
IPR011990 TPR-like_helical_dom_sf Gene3D 550 771
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 579 613
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 324 358
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 183 217

No CAZYmes available for this sequence

No external refs found!