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  5. Sevir.5G251800.1

Sevir.5G251800.1


Description : SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein


Gene families : OG_01_0013837 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013837_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.5G251800.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.5G251800.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_195
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_115


Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0006396 RNA processing ISM GOs from InterProScan
BP GO:0045292 mRNA cis splicing, via spliceosome ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000626 Ubiquitin-like_dom Pfam 735 791
IPR035967 SWAP/Surp_sf SUPERFAMILY 162 241
IPR000061 Surp SMART 189 242
IPR000061 Surp SMART 58 111
IPR000061 Surp Pfam 60 108
IPR000061 Surp Pfam 189 240
IPR035967 SWAP/Surp_sf Gene3D 44 113
IPR022030 SF3A1_dom Pfam 262 477
IPR035967 SWAP/Surp_sf Gene3D 184 242
IPR035967 SWAP/Surp_sf SUPERFAMILY 34 109
IPR000626 Ubiquitin-like_dom ProSiteProfiles 737 793
IPR000061 Surp ProSiteProfiles 60 102
IPR029071 Ubiquitin-like_domsf SUPERFAMILY 691 794
IPR035563 SF3As1_ubi CDD 709 789
IPR000626 Ubiquitin-like_dom SMART 712 789
IPR045146 SF3A1 PANTHER 36 796
IPR000061 Surp ProSiteProfiles 191 233

No CAZYmes available for this sequence

No external refs found!