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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0014774 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014774_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.5G268900.1 | |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.5G268900.1 | |
| Cluster | Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_140 | |
| Cluster | Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_70 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | Pfam | 229 | 278 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 130 | 175 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 195 | 229 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 232 | 265 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 267 | 300 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 340 | 370 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 302 | 336 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 130 | 162 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 198 | 230 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 300 | 334 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 342 | 367 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 127 | 161 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 299 | 328 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 193 | 223 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 230 | 264 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 265 | 299 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 178 | 280 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 281 | 377 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 87 | 177 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 412 | 446 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 335 | 369 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 378 | 478 |
No CAZYmes available for this sequence
| No external refs found! |