- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : pentatricopeptide (PPR) repeat-containing protein
Gene families : OG_01_0002343 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002343_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.5G270700.1 | |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.5G270700.1 | |
| Cluster | Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_55 | |
| Cluster | Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_96 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| BP | GO:0009658 | chloroplast organization | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 739 | 773 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 741 | 767 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 482 | 510 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 707 | 734 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 786 | 819 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 568 | 601 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 698 | 844 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 635 | 669 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 612 | 697 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 556 | 611 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 407 | 553 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 556 | 736 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 566 | 600 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 705 | 750 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 563 | 612 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 784 | 818 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 483 | 508 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 786 | 815 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 639 | 667 |
| IPR044645 | DG1/EMB2279-like | PANTHER | 5 | 952 |
No CAZYmes available for this sequence
| No external refs found! |