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  5. Sevir.5G290400.1

Sevir.5G290400.1


Description : ABC-2 type transporter family protein


Gene families : OG_01_0017260 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0017260_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.5G290400.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.5G290400.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_93
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_3


Type GO Term Name Evidence Source
MF GO:0005524 ATP binding ISM GOs from InterProScan
CC GO:0016020 membrane ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR003439 ABC_transporter-like_ATP-bd Pfam 71 220
IPR003439 ABC_transporter-like_ATP-bd ProSiteProfiles 42 292
IPR027417 P-loop_NTPase Gene3D 50 290
IPR027417 P-loop_NTPase SUPERFAMILY 65 286
IPR013525 ABC2_TM Pfam 449 655
IPR017871 ABC_transporter-like_CS ProSitePatterns 192 206
IPR003593 AAA+_ATPase SMART 79 276

No CAZYmes available for this sequence

No external refs found!