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  5. Sevir.5G298000.3

Sevir.5G298000.3


Description : alpha-amylase-like 3


Gene families : OG_01_0005920 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005920_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.5G298000.3
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.5G298000.3
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_97
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_57


Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity ISM GOs from InterProScan
MF GO:0004556 alpha-amylase activity ISM GOs from InterProScan
MF GO:0005509 calcium ion binding ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR006047 Glyco_hydro_13_cat_dom Pfam 518 771
IPR012850 A-amylase_bs_C Pfam 822 879
IPR017853 Glycoside_hydrolase_SF SUPERFAMILY 490 807
IPR013780 Glyco_hydro_b Gene3D 825 880
IPR012850 A-amylase_bs_C SMART 821 880
IPR006047 Glyco_hydro_13_cat_dom SMART 491 820
HMM Family HMM Length Query Length e-Value Query Start Query End
CBM45 81 883 1.5e-19 304 382
No external refs found!