- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
Gene families : OG_01_0007043 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007043_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.5G299650.1 | |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.5G299650.1 | |
| Cluster | Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_97 | |
| Cluster | Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_95 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003824 | catalytic activity | ISM | GOs from InterProScan |
| MF | GO:0016846 | carbon-sulfur lyase activity | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR015422 | PyrdxlP-dep_Trfase_small | Gene3D | 369 | 478 |
| IPR015421 | PyrdxlP-dep_Trfase_major | Gene3D | 160 | 368 |
| IPR015424 | PyrdxlP-dep_Trfase | SUPERFAMILY | 60 | 477 |
| IPR006948 | Alliinase_C | Pfam | 117 | 476 |
| IPR037029 | Alliinase_N_sf | Gene3D | 58 | 157 |
| IPR006947 | EGF_alliinase | Pfam | 60 | 115 |
No CAZYmes available for this sequence
| No external refs found! |