1. Home
  2. Species
  3. Setaria viridis
  4. Sequence
  5. Sevir.5G312700.1

Sevir.5G312700.1


Description : phosphoesterase


Gene families : OG_01_0007749 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007749_tree

Sequence : cds (download), rna (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.5G312700.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.5G312700.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_140
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_79


Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001510 Znf_PARP ProSiteProfiles 299 381
IPR001510 Znf_PARP ProSiteProfiles 157 239
IPR036412 HAD-like_sf SUPERFAMILY 458 633
IPR001510 Znf_PARP SMART 46 122
IPR001510 Znf_PARP SMART 302 378
IPR001510 Znf_PARP SMART 160 236
IPR036957 Znf_PARP_sf Gene3D 291 396
IPR036957 Znf_PARP_sf Gene3D 34 139
IPR036957 Znf_PARP_sf Gene3D 149 258
IPR013954 PNK3P Pfam 470 632
IPR001510 Znf_PARP ProSiteProfiles 43 125
IPR006551 Polynucleotide_phosphatase TIGRFAM 457 632
IPR001510 Znf_PARP Pfam 302 375
IPR001510 Znf_PARP Pfam 160 233
IPR001510 Znf_PARP Pfam 46 119
IPR023214 HAD_sf Gene3D 448 634
IPR006549 HAD-SF_hydro_IIIA TIGRFAM 470 625

No CAZYmes available for this sequence

No external refs found!