1. Home
  2. Species
  3. Setaria viridis
  4. Sequence
  5. Sevir.5G318100.1

Sevir.5G318100.1


Description : DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding


Gene families : OG_01_0002844 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002844_tree

Sequence : cds (download), rna (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.5G318100.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.5G318100.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_158
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_2


Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0046872 metal ion binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011011 Znf_FYVE_PHD SUPERFAMILY 511 568
IPR036128 Plus3-like_sf Gene3D 899 1027
IPR036128 Plus3-like_sf SUPERFAMILY 898 1027
IPR035445 GYF-like_dom_sf SUPERFAMILY 1221 1283
IPR003169 GYF CDD 1230 1285
IPR003121 SWIB_MDM2_domain Pfam 765 838
IPR003169 GYF SMART 1231 1286
IPR000571 Znf_CCCH ProSiteProfiles 1695 1722
IPR036885 SWIB_MDM2_dom_sf SUPERFAMILY 756 839
IPR019835 SWIB_domain SMART 758 845
IPR013083 Znf_RING/FYVE/PHD Gene3D 503 608
IPR004343 Plus-3_dom Pfam 903 1005
IPR003121 SWIB_MDM2_domain ProSiteProfiles 757 840
IPR035445 GYF-like_dom_sf Gene3D 1232 1289
IPR004343 Plus-3_dom SMART 897 1007
IPR003169 GYF ProSiteProfiles 1230 1284
IPR036885 SWIB_MDM2_dom_sf Gene3D 750 847
IPR003169 GYF Pfam 1233 1273
IPR004343 Plus-3_dom ProSiteProfiles 897 1030
IPR001965 Znf_PHD SMART 515 561

No CAZYmes available for this sequence

No external refs found!