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  5. Sevir.5G344400.1

Sevir.5G344400.1


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG_01_0008855 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008855_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.5G344400.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.5G344400.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_54
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_102


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0008017 microtubule binding ISM GOs from InterProScan
CC GO:0008352 katanin complex ISM GOs from InterProScan
BP GO:0051013 microtubule severing ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001680 WD40_rpt ProSiteProfiles 56 97
IPR001680 WD40_rpt Pfam 230 254
IPR001680 WD40_rpt Pfam 51 88
IPR001680 WD40_rpt Pfam 94 130
IPR001680 WD40_rpt Pfam 136 172
IPR001680 WD40_rpt Pfam 176 214
IPR001680 WD40_rpt SMART 133 172
IPR001680 WD40_rpt SMART 91 130
IPR001680 WD40_rpt SMART 175 214
IPR001680 WD40_rpt SMART 49 88
IPR001680 WD40_rpt SMART 6 46
IPR001680 WD40_rpt SMART 217 255
IPR028021 Katanin_C-terminal Pfam 670 826
IPR019775 WD40_repeat_CS ProSitePatterns 159 173
IPR020472 G-protein_beta_WD-40_rep PRINTS 159 173
IPR020472 G-protein_beta_WD-40_rep PRINTS 117 131
IPR020472 G-protein_beta_WD-40_rep PRINTS 201 215
IPR001680 WD40_rpt ProSiteProfiles 13 55
IPR019775 WD40_repeat_CS ProSitePatterns 201 215
IPR026962 KTNB1 Hamap 2 830
IPR001680 WD40_rpt ProSiteProfiles 140 181
IPR019775 WD40_repeat_CS ProSitePatterns 75 89
IPR001680 WD40_rpt ProSiteProfiles 98 139
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 7 295
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 2 172
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 173 302
IPR001680 WD40_rpt ProSiteProfiles 182 223

No CAZYmes available for this sequence

No external refs found!