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  5. Sevir.5G363832.1

Sevir.5G363832.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0015551 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015551_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.5G363832.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.5G363832.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_118
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_90


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 129 155
IPR002885 Pentatricopeptide_rpt Pfam 262 287
IPR002885 Pentatricopeptide_rpt Pfam 364 385
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 187 221
IPR002885 Pentatricopeptide_rpt TIGRFAM 291 324
IPR002885 Pentatricopeptide_rpt TIGRFAM 189 223
IPR002885 Pentatricopeptide_rpt TIGRFAM 127 153
IPR002885 Pentatricopeptide_rpt TIGRFAM 158 188
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 156 186
IPR011990 TPR-like_helical_dom_sf Gene3D 57 198
IPR011990 TPR-like_helical_dom_sf Gene3D 199 325
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 289 323
IPR011990 TPR-like_helical_dom_sf Gene3D 329 439
IPR002885 Pentatricopeptide_rpt Pfam 186 230
IPR002885 Pentatricopeptide_rpt Pfam 289 336

No CAZYmes available for this sequence

No external refs found!