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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0012495 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012495_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.5G363900.1 | |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.5G363900.1 | No neighbors in network |
| Cluster | Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_118 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | Pfam | 272 | 321 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 342 | 387 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 308 | 342 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 445 | 479 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 273 | 307 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 275 | 308 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 346 | 379 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 140 | 164 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 448 | 479 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 413 | 445 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 311 | 344 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 388 | 500 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 410 | 444 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 413 | 442 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 448 | 477 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 140 | 163 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 75 | 231 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 232 | 367 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 343 | 377 |
No CAZYmes available for this sequence
| No external refs found! |