Sevir.5G368500.1

Description : expansin A1

Gene families : OG_01_0000144 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000144_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.5G368500.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.5G368500.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_136
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_106

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009664	plant-type cell wall organization	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR036908	RlpA-like_sf	Gene3D	13	153
IPR007112	Expansin/allergen_DPBB_dom	SMART	63	148
IPR036749	Expansin_CBD_sf	Gene3D	158	250
IPR036908	RlpA-like_sf	SUPERFAMILY	27	176
IPR007118	Expan_Lol_pI	PRINTS	45	63
IPR007118	Expan_Lol_pI	PRINTS	233	247
IPR007118	Expan_Lol_pI	PRINTS	141	157
IPR007118	Expan_Lol_pI	PRINTS	195	209
IPR007118	Expan_Lol_pI	PRINTS	67	85
IPR007118	Expan_Lol_pI	PRINTS	27	42
IPR002963	Expansin	PRINTS	204	225
IPR002963	Expansin	PRINTS	97	107
IPR002963	Expansin	PRINTS	157	169
IPR002963	Expansin	PRINTS	116	133
IPR002963	Expansin	PRINTS	133	146
IPR002963	Expansin	PRINTS	58	72
IPR002963	Expansin	PRINTS	233	249
IPR002963	Expansin	PRINTS	85	96
IPR002963	Expansin	PRINTS	169	190
IPR036749	Expansin_CBD_sf	SUPERFAMILY	155	247
IPR002963	Expansin	PANTHER	4	250
IPR007112	Expansin/allergen_DPBB_dom	ProSiteProfiles	46	158
IPR009009	RlpA-like_DPBB	Pfam	63	148
IPR007117	Expansin_CBD	Pfam	159	236
IPR007117	Expansin_CBD	ProSiteProfiles	168	247

No CAZYmes available for this sequence

External Links

No external refs found!