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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0013947 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013947_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.5G375400.1 | |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.5G375400.1 | |
| Cluster | Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_55 | |
| Cluster | Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_111 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 244 | 365 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 117 | 151 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 152 | 186 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 222 | 257 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 179 | 233 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 373 | 407 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 329 | 359 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 225 | 259 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 297 | 329 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 121 | 153 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 410 | 443 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 513 | 544 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 375 | 409 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 552 | 578 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 331 | 359 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 445 | 472 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 552 | 576 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 515 | 540 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 261 | 286 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 293 | 338 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 372 | 416 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 121 | 163 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 443 | 477 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 187 | 221 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 544 | 578 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 366 | 478 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 479 | 646 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 82 | 215 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 509 | 543 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 294 | 328 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 408 | 442 |
No CAZYmes available for this sequence
| No external refs found! |