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  5. Sevir.5G388100.1

Sevir.5G388100.1


Description : laccase 12


Gene families : OG_01_0001268 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001268_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.5G388100.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.5G388100.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_194
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_98


Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding ISM GOs from InterProScan
MF GO:0016491 oxidoreductase activity ISM GOs from InterProScan
BP GO:0046274 lignin catabolic process ISM GOs from InterProScan
CC GO:0048046 apoplast ISM GOs from InterProScan
MF GO:0052716 hydroquinone:oxygen oxidoreductase activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR008972 Cupredoxin SUPERFAMILY 220 391
IPR008972 Cupredoxin Gene3D 224 408
IPR011706 Cu-oxidase_C Pfam 472 598
IPR033138 Cu_oxidase_CS ProSitePatterns 574 594
IPR011707 Cu-oxidase-like_N Pfam 100 214
IPR008972 Cupredoxin Gene3D 432 626
IPR045087 Cu-oxidase_fam PANTHER 79 644
IPR008972 Cupredoxin SUPERFAMILY 411 624
IPR034288 CuRO_1_LCC CDD 96 212
IPR002355 Cu_oxidase_Cu_BS ProSitePatterns 579 590
IPR008972 Cupredoxin Gene3D 86 212
IPR008972 Cupredoxin SUPERFAMILY 91 236
IPR017761 Laccase TIGRFAM 92 613
IPR034285 CuRO_2_LCC CDD 227 359
IPR001117 Cu-oxidase_2nd Pfam 226 378
HMM Family HMM Length Query Length e-Value Query Start Query End
AA1 358 724 1.1e-123 110 590
No external refs found!