Sevir.5G400000.1

Description : DNA-directed DNA polymerases

Gene families : OG_01_0006320 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006320_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.5G400000.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.5G400000.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_162
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_148

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003887	DNA-directed DNA polymerase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	ISM	GOs from InterProScan
BP	GO:0006270	DNA replication initiation	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
MF	GO:0034061	DNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1902292	cell cycle DNA replication initiation	None	Extended
BP	GO:1902315	nuclear cell cycle DNA replication initiation	None	Extended
BP	GO:1902975	mitotic DNA replication initiation	ISM	GOs from InterProScan
BP	GO:1903047	mitotic cell cycle process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR024647	DNA_pol_a_cat_su_N	Pfam	29	95
IPR006172	DNA-dir_DNA_pol_B	SMART	567	1067
IPR017964	DNA-dir_DNA_pol_B_CS	ProSitePatterns	1055	1063
IPR038256	Pol_alpha_znc_sf	Gene3D	1325	1522
IPR015088	Znf_DNA-dir_DNA_pol_B_alpha	Pfam	1326	1532
IPR006172	DNA-dir_DNA_pol_B	PRINTS	1000	1012
IPR006172	DNA-dir_DNA_pol_B	PRINTS	924	937
IPR006172	DNA-dir_DNA_pol_B	PRINTS	1053	1061
IPR012337	RNaseH-like_sf	SUPERFAMILY	350	855
IPR042087	DNA_pol_B_thumb	Gene3D	1130	1316
IPR006134	DNA-dir_DNA_pol_B_multi_dom	Pfam	826	1285
IPR006133	DNA-dir_DNA_pol_B_exonuc	Pfam	383	760
IPR023211	DNA_pol_palm_dom_sf	Gene3D	894	1117
IPR043502	DNA/RNA_pol_sf	SUPERFAMILY	851	1301
IPR045846	POLBc_alpha	CDD	900	1301
IPR036397	RNaseH_sf	Gene3D	567	882

No CAZYmes available for this sequence

External Links

No external refs found!

Sevir.5G400000.1

Expression Profile

Co-expression Networks

Functional Annotation