Sevir.5G408200.2

Description : chromatin remodeling factor CHD3 (PICKLE)

Gene families : OG_01_0007578 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007578_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.5G408200.2
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.5G408200.2
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_67
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_29

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	ISM	GOs from InterProScan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR013083	Znf_RING/FYVE/PHD	Gene3D	257	318
IPR011011	Znf_FYVE_PHD	SUPERFAMILY	233	312
IPR000330	SNF2_N	Pfam	514	788
IPR000953	Chromo/chromo_shadow_dom	SMART	400	471
IPR000953	Chromo/chromo_shadow_dom	SMART	327	386
IPR016197	Chromo-like_dom_sf	SUPERFAMILY	398	453
IPR001650	Helicase_C	Pfam	811	881
IPR038718	SNF2-like_sf	Gene3D	494	729
IPR027417	P-loop_NTPase	SUPERFAMILY	487	719
IPR027417	P-loop_NTPase	SUPERFAMILY	721	881
IPR001965	Znf_PHD	SMART	265	312
IPR027417	P-loop_NTPase	Gene3D	730	882
IPR023780	Chromo_domain	Pfam	403	453
IPR014001	Helicase_ATP-bd	SMART	494	693
IPR000953	Chromo/chromo_shadow_dom	ProSiteProfiles	402	453
IPR014001	Helicase_ATP-bd	ProSiteProfiles	510	679
IPR016197	Chromo-like_dom_sf	SUPERFAMILY	285	387

No CAZYmes available for this sequence

External Links

No external refs found!