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  5. Sevir.5G411200.1

Sevir.5G411200.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0018351 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0018351_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.5G411200.1 No neighbors in network
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.5G411200.1
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_49


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 8 42
IPR011990 TPR-like_helical_dom_sf Gene3D 184 418
IPR011990 TPR-like_helical_dom_sf Gene3D 9 172
IPR002885 Pentatricopeptide_rpt TIGRFAM 83 111
IPR002885 Pentatricopeptide_rpt TIGRFAM 285 307
IPR002885 Pentatricopeptide_rpt TIGRFAM 212 245
IPR002885 Pentatricopeptide_rpt TIGRFAM 111 145
IPR002885 Pentatricopeptide_rpt TIGRFAM 10 43
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 109 143
IPR002885 Pentatricopeptide_rpt Pfam 10 40
IPR002885 Pentatricopeptide_rpt Pfam 285 307
IPR002885 Pentatricopeptide_rpt Pfam 184 208
IPR032867 DYW_dom Pfam 383 507
IPR002885 Pentatricopeptide_rpt Pfam 108 155
IPR002885 Pentatricopeptide_rpt Pfam 210 256
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 210 244

No CAZYmes available for this sequence

No external refs found!