Sevir.5G418800.1

Description : ribosomal protein L5 B

Gene families : OG_01_0001860 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001860_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.5G418800.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.5G418800.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_123
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_16

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISM	GOs from InterProScan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	ISM	GOs from InterProScan
BP	GO:0006412	translation	ISM	GOs from InterProScan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008097	5S rRNA binding	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR005485	Rbsml_uL18_euk/arc	Hamap	15	247
IPR025607	Ribosomal_uL18_C_euk	Pfam	236	289
IPR005485	Rbsml_uL18_euk/arc	Pfam	15	176
IPR005485	Rbsml_uL18_euk/arc	PRINTS	207	227
IPR005485	Rbsml_uL18_euk/arc	PRINTS	21	40
IPR005485	Rbsml_uL18_euk/arc	PRINTS	145	164
IPR005485	Rbsml_uL18_euk/arc	PRINTS	44	63
IPR005485	Rbsml_uL18_euk/arc	PRINTS	165	184
IPR005485	Rbsml_uL18_euk/arc	PRINTS	85	105
IPR005485	Rbsml_uL18_euk/arc	PANTHER	1	303

No CAZYmes available for this sequence

External Links

No external refs found!

Sevir.5G418800.1

Expression Profile

Co-expression Networks

Functional Annotation