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Description : tetratricopeptide repeat (TPR)-containing protein
Gene families : OG_01_0007189 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007189_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.5G425700.1 | |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.5G425700.1 | |
| Cluster | Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_78 | |
| Cluster | Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_88 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 432 | 611 |
| IPR019734 | TPR_repeat | Pfam | 118 | 147 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 178 | 294 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 96 | 165 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 295 | 379 |
| IPR019734 | TPR_repeat | ProSiteProfiles | 527 | 560 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 112 | 287 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 305 | 371 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 409 | 605 |
| IPR019734 | TPR_repeat | ProSiteProfiles | 242 | 275 |
| IPR013105 | TPR_2 | Pfam | 329 | 362 |
| IPR013105 | TPR_2 | Pfam | 562 | 592 |
| IPR019734 | TPR_repeat | ProSiteProfiles | 329 | 362 |
| IPR019734 | TPR_repeat | ProSiteProfiles | 561 | 594 |
| IPR019734 | TPR_repeat | ProSiteProfiles | 118 | 151 |
| IPR019734 | TPR_repeat | SMART | 208 | 241 |
| IPR019734 | TPR_repeat | SMART | 458 | 491 |
| IPR019734 | TPR_repeat | SMART | 527 | 560 |
| IPR019734 | TPR_repeat | SMART | 329 | 362 |
| IPR019734 | TPR_repeat | SMART | 561 | 594 |
| IPR019734 | TPR_repeat | SMART | 118 | 151 |
| IPR019734 | TPR_repeat | SMART | 492 | 524 |
| IPR019734 | TPR_repeat | SMART | 242 | 275 |
No CAZYmes available for this sequence
| No external refs found! |