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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0015791 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015791_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.1G196800.1 | No neighbors in network |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.1G196800.1 | |
| Cluster | Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_13 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 51 | 187 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 333 | 423 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 509 | 543 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 339 | 366 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 234 | 262 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 405 | 439 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 342 | 370 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 237 | 265 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 268 | 298 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 209 | 231 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 372 | 405 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 424 | 587 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 189 | 332 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 339 | 373 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 268 | 298 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 208 | 230 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 515 | 541 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 370 | 417 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 469 | 532 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 235 | 269 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 204 | 234 |
No CAZYmes available for this sequence
| No external refs found! |