Sevir.5G473500.1

Description : Pentatricopeptide repeat (PPR) superfamily protein

Gene families : OG_01_0002431 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002431_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.5G473500.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.5G473500.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_162
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_12

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002885	Pentatricopeptide_rpt	Pfam	335	367
IPR002885	Pentatricopeptide_rpt	Pfam	370	401
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	197	231
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	232	266
IPR011990	TPR-like_helical_dom_sf	Gene3D	150	276
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	374	408
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	339	373
IPR011990	TPR-like_helical_dom_sf	Gene3D	415	560
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	304	338
IPR044578	BIR6-like	PANTHER	21	556
IPR002885	Pentatricopeptide_rpt	Pfam	199	229
IPR002885	Pentatricopeptide_rpt	Pfam	448	475
IPR002885	Pentatricopeptide_rpt	Pfam	415	439
IPR002885	Pentatricopeptide_rpt	TIGRFAM	341	374
IPR002885	Pentatricopeptide_rpt	TIGRFAM	314	339
IPR002885	Pentatricopeptide_rpt	TIGRFAM	199	232
IPR002885	Pentatricopeptide_rpt	TIGRFAM	377	409
IPR011990	TPR-like_helical_dom_sf	Gene3D	278	408

No CAZYmes available for this sequence

External Links

No external refs found!