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  5. Sevir.6G006300.2

Sevir.6G006300.2


Description : sequence-specific DNA binding transcription factors


Gene families : OG_01_0007958 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007958_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.6G006300.2
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.6G006300.2
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_32
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_67


Type GO Term Name Evidence Source
BP GO:0042254 ribosome biogenesis ISM GOs from InterProScan
BP GO:0042256 cytosolic ribosome assembly ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR018023 Ribosome_mat_SBDS_CS ProSitePatterns 46 65
IPR037188 Sdo1/SBDS_central_sf SUPERFAMILY 97 171
IPR036786 Ribosome_mat_SBDS_N_sf Gene3D 1 96
IPR002140 Sdo1/SBDS TIGRFAM 13 230
IPR039100 Sdo1/SBDS-like PANTHER 1 355
IPR037188 Sdo1/SBDS_central_sf Gene3D 100 172
IPR036786 Ribosome_mat_SBDS_N_sf SUPERFAMILY 13 96
IPR019783 SDO1/SBDS_N Pfam 16 102
IPR018978 SDO1/SBDS_central Pfam 110 226

No CAZYmes available for this sequence

No external refs found!