Sevir.6G023000.1

Description : transcription factor-related

Gene families : OG_01_0008220 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008220_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.6G023000.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.6G023000.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_78
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_289

Type	GO Term	Name	Evidence	Source
CC	GO:0000439	transcription factor TFIIH core complex	ISM	GOs from InterProScan
MF	GO:0001671	ATPase activator activity	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005667	transcription regulator complex	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006289	nucleotide-excision repair	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
MF	GO:0060590	ATPase regulator activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0090575	RNA polymerase II transcription regulator complex	None	Extended
MF	GO:0098772	molecular function regulator activity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
MF	GO:0140677	molecular function activator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR004598	TFIIH_p52/Tfb2	Pfam	15	366
IPR004598	TFIIH_p52/Tfb2	TIGRFAM	13	450
IPR040662	Tfb2_C	Pfam	381	448
IPR004598	TFIIH_p52/Tfb2	PANTHER	8	449

No CAZYmes available for this sequence

External Links

No external refs found!

Sevir.6G023000.1

Expression Profile

Co-expression Networks

Functional Annotation