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  5. Seita.1G014200.1

Seita.1G014200.1


Description : cyclic nucleotide gated channel 1


Gene families : OG_01_0003210 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003210_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.1G014200.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_166


Type GO Term Name Evidence Source
MF GO:0005216 monoatomic ion channel activity ISM GOs from InterProScan
BP GO:0006811 monoatomic ion transport ISM GOs from InterProScan
CC GO:0016020 membrane ISM GOs from InterProScan
BP GO:0055085 transmembrane transport ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR018490 cNMP-bd_dom_sf SUPERFAMILY 403 595
IPR000595 cNMP-bd_dom ProSiteProfiles 473 557
IPR005821 Ion_trans_dom Pfam 86 397
IPR000595 cNMP-bd_dom CDD 473 604
IPR000595 cNMP-bd_dom SMART 473 604
IPR000595 cNMP-bd_dom Pfam 494 583
IPR014710 RmlC-like_jellyroll Gene3D 471 591
IPR000595 cNMP-bd_dom ProSiteProfiles 473 557
IPR018490 cNMP-bd_dom_sf SUPERFAMILY 403 595
IPR000595 cNMP-bd_dom Pfam 494 583
IPR014710 RmlC-like_jellyroll Gene3D 471 591
IPR005821 Ion_trans_dom Pfam 83 398
IPR000595 cNMP-bd_dom SMART 473 604
IPR000595 cNMP-bd_dom CDD 473 604

No CAZYmes available for this sequence

No external refs found!