Seita.1G019200.1

Description : transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)

Gene families : OG_01_0000908 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000908_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.1G019200.1
Cluster	Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_155

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005667	transcription regulator complex	None	Extended
CC	GO:0005672	transcription factor TFIIA complex	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription initiation	None	Extended
BP	GO:0006367	transcription initiation at RNA polymerase II promoter	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0090575	RNA polymerase II transcription regulator complex	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR003194	TFIIA_gsu	PIRSF	1	106
IPR009088	TFIIA_b-brl	SUPERFAMILY	52	102
IPR015871	TFIIA_gsu_C	Pfam	60	101
IPR009088	TFIIA_b-brl	Gene3D	55	105
IPR003194	TFIIA_gsu	PANTHER	1	102
IPR015871	TFIIA_gsu_C	CDD	57	102
IPR009083	TFIIA_a-hlx	Gene3D	1	54
IPR015872	TFIIA_gsu_N	Pfam	4	49
IPR015872	TFIIA_gsu_N	CDD	4	49
IPR015871	TFIIA_gsu_C	Pfam	60	101
IPR003194	TFIIA_gsu	PANTHER	1	109
IPR009088	TFIIA_b-brl	Gene3D	55	105
IPR015871	TFIIA_gsu_C	CDD	57	102
IPR015872	TFIIA_gsu_N	Pfam	4	49
IPR003194	TFIIA_gsu	PIRSF	1	106
IPR009083	TFIIA_a-hlx	Gene3D	1	54
IPR015872	TFIIA_gsu_N	CDD	4	49
IPR009088	TFIIA_b-brl	SUPERFAMILY	52	102

No CAZYmes available for this sequence

External Links

No external refs found!

Seita.1G019200.1

Expression Profile

Co-expression Networks

Functional Annotation