1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.1G023600.1

Seita.1G023600.1


Description : FAD-binding Berberine family protein


Gene families : OG_01_0000505 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000505_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.1G023600.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_40


Type GO Term Name Evidence Source
MF GO:0016491 oxidoreductase activity ISM GOs from InterProScan
MF GO:0050660 flavin adenine dinucleotide binding ISM GOs from InterProScan
MF GO:0071949 FAD binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR016167 FAD-bd_PCMH_sub1 Gene3D 90 203
IPR016166 FAD-bd_PCMH ProSiteProfiles 138 320
IPR036318 FAD-bd_PCMH-like_sf SUPERFAMILY 129 321
IPR016169 FAD-bd_PCMH_sub2 Gene3D 208 606
IPR006094 Oxid_FAD_bind_N Pfam 142 286
IPR012951 BBE Pfam 548 605
IPR016169 FAD-bd_PCMH_sub2 Gene3D 208 606
IPR036318 FAD-bd_PCMH-like_sf SUPERFAMILY 129 321
IPR012951 BBE Pfam 548 605
IPR016167 FAD-bd_PCMH_sub1 Gene3D 90 203
IPR006094 Oxid_FAD_bind_N Pfam 142 286
IPR016166 FAD-bd_PCMH ProSiteProfiles 138 320
HMM Family HMM Length Query Length e-Value Query Start Query End
AA7 458 622 2.1e-87 137 604
No external refs found!