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Description : Pentatricopeptide repeat (PPR-like) superfamily protein
Gene families : OG_01_0009713 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0009713_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.1G204500.1 | |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.1G204500.1 | |
| Cluster | Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_145 | |
| Cluster | Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_109 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | Pfam | 339 | 388 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 479 | 527 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 412 | 458 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 269 | 318 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 164 | 213 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 235 | 269 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 319 | 421 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 100 | 215 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 216 | 318 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 133 | 163 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 375 | 409 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 410 | 444 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 305 | 339 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 422 | 564 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 515 | 549 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 270 | 304 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 200 | 234 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 165 | 199 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 340 | 374 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 167 | 201 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 412 | 446 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 518 | 548 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 307 | 340 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 272 | 306 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 482 | 516 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 202 | 235 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 377 | 409 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 237 | 271 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 136 | 160 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 343 | 376 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 447 | 481 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 130 | 160 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 230 | 260 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 445 | 479 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 480 | 514 |
No CAZYmes available for this sequence
| No external refs found! |