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  5. Seita.1G081200.1

Seita.1G081200.1


Description : TCP-1/cpn60 chaperonin family protein


Gene families : OG_01_0010513 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010513_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.1G081200.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_5


Type GO Term Name Evidence Source
MF GO:0005524 ATP binding ISM GOs from InterProScan
BP GO:0006457 protein folding ISM GOs from InterProScan
MF GO:0016887 ATP hydrolysis activity ISM GOs from InterProScan
MF GO:0051082 unfolded protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR027413 GROEL-like_equatorial_sf Gene3D 32 524
IPR017998 Chaperone_TCP-1 PANTHER 14 525
IPR002423 Cpn60/GroEL/TCP-1 Pfam 35 526
IPR027409 GroEL-like_apical_dom_sf SUPERFAMILY 210 379
IPR027409 GroEL-like_apical_dom_sf Gene3D 215 370
IPR012720 Chap_CCT_eta CDD 8 529
IPR017998 Chaperone_TCP-1 PRINTS 59 77
IPR017998 Chaperone_TCP-1 PRINTS 37 53
IPR017998 Chaperone_TCP-1 PRINTS 408 420
IPR017998 Chaperone_TCP-1 PRINTS 374 396
IPR017998 Chaperone_TCP-1 PRINTS 89 108
IPR027410 TCP-1-like_intermed_sf SUPERFAMILY 155 406
IPR002194 Chaperonin_TCP-1_CS ProSitePatterns 89 97
IPR002194 Chaperonin_TCP-1_CS ProSitePatterns 61 77
IPR002194 Chaperonin_TCP-1_CS ProSitePatterns 40 52
IPR012720 Chap_CCT_eta NCBIfam 6 529
IPR027413 GROEL-like_equatorial_sf SUPERFAMILY 17 526
IPR027410 TCP-1-like_intermed_sf Gene3D 145 406
IPR002194 Chaperonin_TCP-1_CS ProSitePatterns 89 97
IPR017998 Chaperone_TCP-1 PANTHER 4 540
IPR027413 GROEL-like_equatorial_sf Gene3D 32 524
IPR027409 GroEL-like_apical_dom_sf Gene3D 215 370
IPR002194 Chaperonin_TCP-1_CS ProSitePatterns 40 52
IPR002194 Chaperonin_TCP-1_CS ProSitePatterns 61 77
IPR027409 GroEL-like_apical_dom_sf SUPERFAMILY 210 379
IPR027410 TCP-1-like_intermed_sf Gene3D 145 406
IPR012720 Chap_CCT_eta TIGRFAM 6 529
IPR027410 TCP-1-like_intermed_sf SUPERFAMILY 155 406
IPR012720 Chap_CCT_eta CDD 8 529
IPR002423 Cpn60/GroEL/TCP-1 Pfam 35 526
IPR017998 Chaperone_TCP-1 PRINTS 59 77
IPR017998 Chaperone_TCP-1 PRINTS 37 53
IPR017998 Chaperone_TCP-1 PRINTS 408 420
IPR017998 Chaperone_TCP-1 PRINTS 374 396
IPR017998 Chaperone_TCP-1 PRINTS 89 108
IPR027413 GROEL-like_equatorial_sf SUPERFAMILY 17 526

No CAZYmes available for this sequence

No external refs found!