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  5. Seita.1G103100.1

Seita.1G103100.1


Description : transducin family protein / WD-40 repeat family protein


Gene families : OG_01_0001432 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001432_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.1G103100.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_263


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0006623 protein targeting to vacuole ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR025941 Vps8_central_dom Pfam 1052 1237
IPR001680 WD40_rpt SMART 562 604
IPR001680 WD40_rpt SMART 607 646
IPR001841 Znf_RING ProSiteProfiles 1824 1872
IPR024977 Apc4-like_WD40_dom Pfam 537 614
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 519 853
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 354 678
IPR045111 Vps41/Vps8 PANTHER 442 1939
IPR001680 WD40_rpt ProSiteProfiles 572 613
IPR025941 Vps8_central_dom Pfam 1052 1237
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 519 853
IPR024977 Apc4-like_WD40_dom Pfam 537 616
IPR001680 WD40_rpt SMART 562 604
IPR001680 WD40_rpt SMART 607 646
IPR001680 WD40_rpt ProSiteProfiles 572 613
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 354 678
IPR045111 Vps41/Vps8 PANTHER 371 1940
IPR001841 Znf_RING ProSiteProfiles 1824 1872

No CAZYmes available for this sequence

No external refs found!