- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0007426 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007426_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.6G034000.1 | |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.6G034000.1 | |
| Cluster | Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_59 | |
| Cluster | Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_44 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 144 | 173 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 351 | 383 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 249 | 281 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 177 | 208 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 386 | 419 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 456 | 488 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 315 | 348 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 420 | 453 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 313 | 347 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 237 | 292 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 173 | 207 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 383 | 417 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 246 | 280 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 53 | 224 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 293 | 396 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 397 | 514 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 138 | 172 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 348 | 382 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 418 | 452 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 300 | 359 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 141 | 185 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 407 | 466 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 239 | 290 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 453 | 487 |
No CAZYmes available for this sequence
| No external refs found! |