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  5. Sevir.6G034800.1

Sevir.6G034800.1


Description : starch synthase 3


Gene families : OG_01_0002239 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002239_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.6G034800.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.6G034800.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_65
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_165


Type GO Term Name Evidence Source
MF GO:0004373 glycogen (starch) synthase activity ISM GOs from InterProScan
MF GO:2001070 starch binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR013783 Ig-like_fold Gene3D 882 982
IPR013783 Ig-like_fold Gene3D 546 640
IPR005085 CBM25 SMART 884 973
IPR005085 CBM25 SMART 547 632
IPR005085 CBM25 SMART 722 813
IPR013534 Starch_synth_cat_dom Pfam 983 1170
IPR011835 GS/SS Hamap 982 1427
IPR005085 CBM25 Pfam 887 972
IPR005085 CBM25 Pfam 551 631
IPR005085 CBM25 Pfam 725 810
HMM Family HMM Length Query Length e-Value Query Start Query End
CBM53 87 1431 1.2e-30 884 972
GT5 472 1431 5.3e-137 983 1425
No external refs found!