1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.1G203200.1

Seita.1G203200.1


Description : RNA-binding protein 47C\'


Gene families : OG_01_0006848 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006848_tree

Sequence : cds (download), rna (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.1G203200.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_57


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR035979 RBD_domain_sf SUPERFAMILY 70 184
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 185 285
IPR035979 RBD_domain_sf SUPERFAMILY 189 287
IPR000504 RRM_dom ProSiteProfiles 197 276
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 286 402
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 103 183
IPR000504 RRM_dom SMART 198 272
IPR000504 RRM_dom SMART 299 366
IPR000504 RRM_dom SMART 105 180
IPR035979 RBD_domain_sf SUPERFAMILY 288 398
IPR000504 RRM_dom ProSiteProfiles 104 184
IPR000504 RRM_dom Pfam 106 172
IPR000504 RRM_dom Pfam 300 363
IPR000504 RRM_dom Pfam 199 269
IPR000504 RRM_dom ProSiteProfiles 298 370
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 185 285
IPR000504 RRM_dom ProSiteProfiles 298 370
IPR035979 RBD_domain_sf SUPERFAMILY 70 184
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 103 183
IPR035979 RBD_domain_sf SUPERFAMILY 189 287
IPR000504 RRM_dom SMART 198 272
IPR000504 RRM_dom SMART 299 366
IPR000504 RRM_dom SMART 105 180
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 286 402
IPR035979 RBD_domain_sf SUPERFAMILY 288 398
IPR000504 RRM_dom Pfam 199 269
IPR000504 RRM_dom Pfam 106 172
IPR000504 RRM_dom Pfam 300 363
IPR000504 RRM_dom ProSiteProfiles 104 184
IPR000504 RRM_dom ProSiteProfiles 197 276

No CAZYmes available for this sequence

No external refs found!