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  5. Seita.1G229500.1

Seita.1G229500.1


Description : SET domain group 4


Gene families : OG_01_0003563 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003563_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.1G229500.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_5


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
CC GO:0005634 nucleus ISM GOs from InterProScan
MF GO:0018024 obsolete histone lysine N-methyltransferase activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR013083 Znf_RING/FYVE/PHD Gene3D 151 251
IPR006560 AWS_dom ProSiteProfiles 319 364
IPR046341 SET_dom_sf SUPERFAMILY 277 493
IPR047893 ASHR3-like_SET CDD 365 503
IPR046341 SET_dom_sf Gene3D 273 521
IPR001214 SET_dom ProSiteProfiles 364 481
IPR001214 SET_dom SMART 364 487
IPR003616 Post-SET_dom ProSiteProfiles 487 503
IPR001965 Znf_PHD SMART 205 249
IPR001965 Znf_PHD SMART 156 204
IPR025787 Hist-Lys_N-MeTrfase_SET2_plant ProSiteProfiles 1 586
IPR001214 SET_dom Pfam 375 480
IPR013083 Znf_RING/FYVE/PHD Gene3D 151 251
IPR003616 Post-SET_dom ProSiteProfiles 487 503
IPR001214 SET_dom SMART 364 487
IPR001965 Znf_PHD SMART 205 249
IPR001965 Znf_PHD SMART 156 204
IPR006560 AWS_dom ProSiteProfiles 319 364
IPR001214 SET_dom Pfam 375 480
IPR001214 SET_dom ProSiteProfiles 364 481
IPR025787 Hist-Lys_N-MeTrfase_SET2_plant ProSiteProfiles 1 586

No CAZYmes available for this sequence

No external refs found!