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  5. Seita.1G263300.1

Seita.1G263300.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0019647 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0019647_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.1G263300.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_170


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 172 219
IPR002885 Pentatricopeptide_rpt Pfam 475 523
IPR046848 E_motif Pfam 593 654
IPR011990 TPR-like_helical_dom_sf Gene3D 299 448
IPR011990 TPR-like_helical_dom_sf Gene3D 80 238
IPR011990 TPR-like_helical_dom_sf Gene3D 449 658
IPR002885 Pentatricopeptide_rpt NCBIfam 478 511
IPR002885 Pentatricopeptide_rpt NCBIfam 378 411
IPR002885 Pentatricopeptide_rpt NCBIfam 551 575
IPR002885 Pentatricopeptide_rpt NCBIfam 174 205
IPR002885 Pentatricopeptide_rpt NCBIfam 514 540
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 375 409
IPR045215 PPR_prot_At1g15510 PANTHER 272 363
IPR002885 Pentatricopeptide_rpt Pfam 543 575
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 476 510
IPR002885 Pentatricopeptide_rpt Pfam 247 267
IPR002885 Pentatricopeptide_rpt Pfam 80 104
IPR002885 Pentatricopeptide_rpt Pfam 276 302
IPR002885 Pentatricopeptide_rpt Pfam 378 405
IPR002885 Pentatricopeptide_rpt Pfam 146 171
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 547 581
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 172 206
IPR002885 Pentatricopeptide_rpt Pfam 276 302
IPR002885 Pentatricopeptide_rpt Pfam 80 104
IPR002885 Pentatricopeptide_rpt Pfam 378 405
IPR002885 Pentatricopeptide_rpt Pfam 146 171
IPR002885 Pentatricopeptide_rpt Pfam 247 267
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 476 510
IPR002885 Pentatricopeptide_rpt TIGRFAM 551 575
IPR002885 Pentatricopeptide_rpt TIGRFAM 478 511
IPR002885 Pentatricopeptide_rpt TIGRFAM 378 411
IPR002885 Pentatricopeptide_rpt TIGRFAM 174 205
IPR002885 Pentatricopeptide_rpt TIGRFAM 514 540
IPR002885 Pentatricopeptide_rpt Pfam 543 575
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 172 206
IPR002885 Pentatricopeptide_rpt Pfam 172 219
IPR002885 Pentatricopeptide_rpt Pfam 475 522
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 375 409
IPR011990 TPR-like_helical_dom_sf Gene3D 299 448
IPR011990 TPR-like_helical_dom_sf Gene3D 80 238
IPR011990 TPR-like_helical_dom_sf Gene3D 449 658
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 547 581

No CAZYmes available for this sequence

No external refs found!