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  5. Seita.1G271200.1

Seita.1G271200.1


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG_01_0007801 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007801_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.1G271200.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_127


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0006364 rRNA processing ISM GOs from InterProScan
MF GO:0034511 U3 snoRNA binding ISM GOs from InterProScan
MF GO:0046872 metal ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 136 423
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 278 428
IPR041367 Znf-CCCH_4 Pfam 106 127
IPR000571 Znf_CCCH ProSiteProfiles 102 130
IPR019775 WD40_repeat_CS ProSitePatterns 281 295
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 132 277
IPR000571 Znf_CCCH SMART 29 53
IPR000571 Znf_CCCH SMART 102 129
IPR000571 Znf_CCCH ProSiteProfiles 28 54
IPR001680 WD40_rpt Pfam 299 333
IPR001680 WD40_rpt Pfam 259 294
IPR001680 WD40_rpt Pfam 138 173
IPR001680 WD40_rpt ProSiteProfiles 141 182
IPR001680 WD40_rpt ProSiteProfiles 264 303
IPR036855 Znf_CCCH_sf SUPERFAMILY 107 137
IPR001680 WD40_rpt SMART 338 381
IPR001680 WD40_rpt SMART 297 334
IPR001680 WD40_rpt SMART 213 250
IPR001680 WD40_rpt SMART 134 173
IPR001680 WD40_rpt SMART 257 294
IPR001680 WD40_rpt SMART 384 421
IPR020472 G-protein_beta_WD-40_rep PRINTS 321 335
IPR020472 G-protein_beta_WD-40_rep PRINTS 160 174
IPR020472 G-protein_beta_WD-40_rep PRINTS 281 295
IPR039241 Rrp9-like PANTHER 9 425
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 278 428
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 136 423
IPR000571 Znf_CCCH ProSiteProfiles 28 54
IPR041367 Znf-CCCH_4 Pfam 106 127
IPR001680 WD40_rpt ProSiteProfiles 264 303
IPR001680 WD40_rpt ProSiteProfiles 141 182
IPR001680 WD40_rpt Pfam 262 294
IPR001680 WD40_rpt Pfam 140 173
IPR001680 WD40_rpt Pfam 299 333
IPR019775 WD40_repeat_CS ProSitePatterns 281 295
IPR000571 Znf_CCCH SMART 29 53
IPR000571 Znf_CCCH SMART 102 129
IPR000571 Znf_CCCH ProSiteProfiles 102 130
IPR036855 Znf_CCCH_sf SUPERFAMILY 107 137
IPR020472 G-protein_beta_WD-40_rep PRINTS 321 335
IPR020472 G-protein_beta_WD-40_rep PRINTS 160 174
IPR020472 G-protein_beta_WD-40_rep PRINTS 281 295
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 132 277
IPR001680 WD40_rpt SMART 338 381
IPR001680 WD40_rpt SMART 297 334
IPR001680 WD40_rpt SMART 213 250
IPR001680 WD40_rpt SMART 134 173
IPR001680 WD40_rpt SMART 257 294
IPR001680 WD40_rpt SMART 384 421

No CAZYmes available for this sequence

No external refs found!