Sevir.6G048700.1

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG_01_0016523 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0016523_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.6G048700.1	No neighbors in network
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.6G048700.1
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_49

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	213	247
IPR011990	TPR-like_helical_dom_sf	Gene3D	112	211
IPR011990	TPR-like_helical_dom_sf	Gene3D	212	299
IPR011990	TPR-like_helical_dom_sf	Gene3D	413	526
IPR011990	TPR-like_helical_dom_sf	Gene3D	300	412
IPR045215	PPR_prot_At1g15510	PANTHER	121	179
IPR045215	PPR_prot_At1g15510	PANTHER	9	115
IPR002885	Pentatricopeptide_rpt	Pfam	244	292
IPR002885	Pentatricopeptide_rpt	Pfam	347	393
IPR002885	Pentatricopeptide_rpt	Pfam	185	210
IPR002885	Pentatricopeptide_rpt	Pfam	321	346
IPR002885	Pentatricopeptide_rpt	Pfam	421	446
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	418	452
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	347	381
IPR002885	Pentatricopeptide_rpt	TIGRFAM	153	181
IPR002885	Pentatricopeptide_rpt	TIGRFAM	215	245
IPR002885	Pentatricopeptide_rpt	TIGRFAM	422	445
IPR002885	Pentatricopeptide_rpt	TIGRFAM	246	273
IPR002885	Pentatricopeptide_rpt	TIGRFAM	384	417
IPR002885	Pentatricopeptide_rpt	TIGRFAM	349	383
IPR002885	Pentatricopeptide_rpt	TIGRFAM	185	214
IPR002885	Pentatricopeptide_rpt	Pfam	151	179
IPR045215	PPR_prot_At1g15510	PANTHER	180	526
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	154	506
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	151	185

No CAZYmes available for this sequence

External Links

No external refs found!