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  5. Seita.1G289400.1

Seita.1G289400.1


Description : tubby like protein 2


Gene families : OG_01_0004228 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004228_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.1G289400.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_11


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR018066 Tubby_C_CS ProSitePatterns 357 370
IPR001810 F-box_dom Pfam 70 113
IPR000007 Tubby_C Pfam 131 424
IPR000007 Tubby_C PRINTS 250 277
IPR000007 Tubby_C PRINTS 357 373
IPR000007 Tubby_C PRINTS 407 429
IPR000007 Tubby_C PRINTS 339 356
IPR000007 Tubby_C PRINTS 186 202
IPR000007 Tubby_C PRINTS 202 226
IPR000007 Tubby_C PRINTS 386 405
IPR018066 Tubby_C_CS ProSitePatterns 414 429
IPR025659 Tubby-like_C SUPERFAMILY 120 429
IPR036047 F-box-like_dom_sf SUPERFAMILY 54 113
IPR025659 Tubby-like_C Gene3D 128 429
IPR036047 F-box-like_dom_sf SUPERFAMILY 54 113
IPR025659 Tubby-like_C SUPERFAMILY 120 429
IPR000007 Tubby_C PRINTS 250 277
IPR000007 Tubby_C PRINTS 357 373
IPR000007 Tubby_C PRINTS 407 429
IPR000007 Tubby_C PRINTS 339 356
IPR000007 Tubby_C PRINTS 186 202
IPR000007 Tubby_C PRINTS 202 226
IPR000007 Tubby_C PRINTS 386 405
IPR018066 Tubby_C_CS ProSitePatterns 357 370
IPR018066 Tubby_C_CS ProSitePatterns 414 429
IPR025659 Tubby-like_C Gene3D 128 429
IPR000007 Tubby_C Pfam 131 424
IPR001810 F-box_dom Pfam 70 116

No CAZYmes available for this sequence

No external refs found!